My GitHub page has the most up-to-date repository of software projects.
Below you’ll find details on software packages that my students and I have built.
sdp: deep nonparametric estimation of discrete conditional distributions via smoothed dyadic partitioning. In a nutshell, this is a superior alternative to the use of Gaussian mixture models as the final output layer of a deep neural network for the purpose of conditional density estimation. By Wesley Tansey.
gfl: a fast and flexible algorithm for solving the graph-fused lasso on an arbitrary graph with arbitrary smooth convex loss (negative log likelihood. By Wesley Tansey.
smoothfdr. Exploits spatial structure in multiple-testing problems that have test statistics observed on a spatial lattice or arbitrary graph. By Wesley Tansey.
FDRreg. Tools for false-discovery rate problems, including false-discovery rate regression (whereby covariates can influence local FDR). An old version is on CRAN, but you’re better off with the latest version of the package from GitHub available using the install_github command through the devtools package. See the Read Me for details.
helloPG. An R package skeleton for incorporating the Polya-Gamma distribution into your own code or package. Not a package per se, and thus not on CRAN. This uses the PG simulation routines originally written by Jesse for BayesLogit (see below).
BayesLogit: Bayesian modeling of discrete outcomes via logistic and negative-binomial regression using Polya-Gamma data augmentation. All the hard work by Jesse Windle.
BayesBridge: Bayesian bridge regression. All the hard work by Jesse Windle.